Quicksearch Across All Resources
Perform a quick search across projects, cases, files, genes, mutations, and annotations using a simple query string.
HealthGenomicsCancerSample: query
1 credit / call
Unknown
Latency unavailable
Back to providers
Provider profileAvailable in QVeris
NCI Genomic Data Commons (GDC) API
The GDC Application Programming Interface (API) provides developers with a programmatic interface to query, analyze, and download GDC data and submit data to the GDC. The GDC API drives the GDC Data Portal, the GDC Submission Portal and is made accessible to external users for programmatic access to the same functionality found through GDC Portals
Data & AnalyticsHealth Life ScienceMedical RecordsScience Health PublicGenomic Variant DataGenomic Data SchemaGenomic Data Catalog
Continue with this provider
This provider-level handoff preserves only its public ID. No tool or business task is guessed; choose a current tool during rediscovery before setup can be treated as complete.
- Selected provider
- cancer_gdc
- Selected tool
- Unknown — confirm during rediscovery
- Business task
- Unknown — confirm during rediscovery
- Catalog updated
- Unknown — confirm during rediscovery
Continue setupThe Plugins page keeps a safe link back to this provider profile.
Tools
48
Ready to inspect and call
Capabilities
Unknown
Covered task areas
Success
Unknown
Recent call reliability
Latency
Unknown
Typical response time
From
1 credits
QVeris credits
ToolCapabilityCostQualityAction
Mutated Cases Count by Project
Returns counts for the number of cases that have associated SSM data in each project.; Produces counts for the number of cases that have associated ssm data in each project.
Health & Life ScienceGenomic Data CatalogScience, Health & Public DataSample: size, pretty
1 credit / call
Unknown
Latency unavailable
Top Cases Counts by Genes
Returns the number of cases with a mutation in each gene listed in the gene_ids parameter for each project.; Gives the number of cases with a mutation in each gene listed in the gene_ids parameter for each project. Cannot be used with format or fields parameters.
Health & Life ScienceGenomic Variant DataScience, Health & Public DataSample: gene_ids
1 credit / call
Unknown
Latency unavailable
Top Mutated Cases by Gene
Generates information about the cases that are most affected by mutations in a given number of genes.; Generates information about the cases most affected by mutations in a given number of genes, limited by size parameter.
Health & Life ScienceGenomic Variant DataScience, Health & Public DataSample: filters
1 credit / call
Unknown
Latency unavailable
Top Mutated Genes by Project
Outputs the genes that are mutated in the most cases in a specified project, counting mutations with HIGH or MODERATE impact on gene function.
Health & Life ScienceGenomic Variant DataScience, Health & Public DataSample: filters
1 credit / call
Unknown
Latency unavailable
Search Annotations
Search annotations added to data after curation
Search ApiSample: from, size, format
1 credit / call
Unknown
Latency unavailable
List annotations
Search and retrieve annotations to GDC data.
BioinformaticsGenomicsData Retrieval
1 credit / call
Unknown
Latency unavailable
Search Cases with Filters
Search and retrieve cases using the filters parameter for complex queries in JSON format.
HealthGenomicsCancerSample: size, filters
1 credit / call
Unknown
Latency unavailable
Search Cases
Search and retrieve case metadata, including nested biospecimen entities.; Search for cancer cases using complex filters, facets, and other query parameters.
MetadataQueryHealthcareSample: size, fields, filters
1 credit / call
Unknown
Latency unavailable
Query cases
Search and retrieve information related to cases, or sample donors
HealthcareCancerGenomics
1 credit / call
Unknown
Latency unavailable
Search Cases (POST)
Search and retrieve information related to cases (sample donors) in the GDC.; Search for cancer cases using POST request with JSON body containing filters and other parameters.
HealthcareGenomicsCancer Research
1 credit / call
Unknown
Latency unavailable
List CNV Occurrences by IDs
Retrieve nodes that contain the queried CNV occurrence ID using query parameter.
Health & Life ScienceGenomic Variant DataScience, Health & Public DataSample: query
1 credit / call
Unknown
Latency unavailable
List Copy Number Variation Occurrences
Allows users to access CNV entities as applied to a single case.; Lists copy number variation occurrences with filters, fields, and format options.
Sample: fields, format, filters
1 credit / call
Unknown
Latency unavailable
List CNVs by IDs
Retrieve nodes that contain the queried CNV ID using query parameter.
Health & Life ScienceGenomic Variant DataScience, Health & Public DataSample: query
1 credit / call
Unknown
Latency unavailable
List Copy Number Variations
Allows users to access data about copy number variations (CNVs).; Lists copy number variations (CNVs) with filters, pagination, sorting, and format options.
Health & Life ScienceGenomic Variant DataScience, Health & Public DataSample: size, sort, format
1 credit / call
Unknown
Latency unavailable
Download Multiple Data Files
Download multiple GDC files by providing a list of UUIDs.
DownloadFileCancerSample: ids
1 credit / call
Unknown
Latency unavailable
Search Files
Searches and retrieves files matching the specified filters using POST request. Recommended for large queries to avoid URL length limits. Example queries Gene Expression Quantification files for specific TCGA cases.
HealthGenomicsDataSample: size, format, pretty
1 credit / call
Unknown
Latency unavailable
List GDC Files with Query Parameters
Retrieve file information from the GDC using HTTP GET with query parameters for filtering and formatting.; Search and retrieve information relating to files stored in the GDC.; Retrieve a paginated list of genomic data files with optional filtering, field selection, and formatting.
MetadataQueryHealthcareSample: size, fields, format
1 credit / call
Unknown
Latency unavailable
List files
Search and retrieve information about files stored in the GDC.; Retrieve metadata for files using POST request with filters, fields, format and size parameters.
BioinformaticsGenomicsData Retrieval
1 credit / call
Unknown
Latency unavailable
Query Files
Retrieve metadata for files from the GDC database using complex filters, with fields, format, and size parameters.
MetadataQueryHealthcareSample: size, fields, format
1 credit / call
Unknown
Latency unavailable